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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
BRCA rs391859 chr13:111160304 A/G 2.21E-7 1028 23.25 21.43 21.53 KM Plot
BRCA rs3977736 chr10:104447629 A/G 4.07E-5 1028 20.7 24.83 19.47 KM Plot
BRCA rs41293118 chr20:30510645 T/G 4.41E-14 1021 21.28 24.28 8.5 KM Plot
BRCA rs4314064 chr20:2753173 T/C 5.45E-6 1017 22.18 20.77 10.13 KM Plot
BRCA rs45553043 chr6:43153484 G/A 1.79E-13 1016 21.68 21.93 10.73 KM Plot
BRCA rs4609941 chr18:44645491 T/C 2.12E-5 1022 21.57 22.2 18.13 KM Plot
BRCA rs4700774 chr5:180434216 G/A 2.23E-5 990 21.17 23.65 24.93 KM Plot
BRCA rs4819024 chr21:46471697 G/T 3.06E-5 1009 22.6 19.67 11.87 KM Plot
BRCA rs4886854 chr15:77476041 C/G 2.32E-5 1028 27.32 25.23 20.97 KM Plot
BRCA rs4987053 chr3:46306700 C/T 1.49E-5 1028 20.4 18.4 22.17 KM Plot
BRCA rs55673704 chr10:16592637 C/T 1.98E-8 1021 22.2 19.67 16.48 KM Plot
BRCA rs56232567 chr7:130295700 G/A 3.02E-5 1023 22.2 20.4 17.93 KM Plot
BRCA rs56290629 chr21:46470325 G/A 3.1E-5 1006 22.6 20.47 11.87 KM Plot
BRCA rs56396010 chr2:75968402 A/T 3.07E-6 1016 21.43 21.5 26.4 KM Plot
BRCA rs56714312 chr5:147412771 G/T 4.53E-5 1027 22.02 18.4 20.87 KM Plot